In
bioinformatics we face the problem of manipulating huge volumes of data and
most bioinformatic programs still use plain text as output. Each time a new
program is released a new output format is created and new computer parsers
should be programmed on every place the program is to be used. Using XML for
storing outputs has started to be common in some well-known programs but it is
not the best solution (for bioinformatic programs) available today. Here I show how to use SQLite in a very basic bioinformatic example.
Complete document: http://zdruid.blogspot.com/p/on-file-formats-of-bioinformatic.html
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